STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2503KEGG: hch:HCH_06118 hypothetical protein. (233 aa)    
Predicted Functional Partners:
Swoo_2504
PFAM: TPR repeat-containing protein; heat shock protein DnaJ domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bcl:ABC0679 hypothetical protein.
 
 
   0.893
Swoo_2505
2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: bcl:ABC0680 molecular chaperone HscC.
 
   
 0.807
Swoo_2502
Hypothetical protein.
       0.773
Swoo_2506
KEGG: son:SO_0804 hypothetical protein.
       0.664
Swoo_2508
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: asa:ASA_1311 rhs family protein.
 
  
 0.614
Swoo_2510
KEGG: eca:ECA3423 hypothetical protein.
  
    0.605
Swoo_1054
KEGG: spl:Spea_0899 conserved hypothetical protein.
 
   0.534
Swoo_1818
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sse:Ssed_2827 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.533
Swoo_1512
KEGG: sse:Ssed_1381 signal transduction histidine kinase-like protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
  
 0.492
Swoo_0764
PFAM: Ankyrin; KEGG: hch:HCH_04005 FOG: ankyrin repeat.
  
    0.475
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.