Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2528TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: vco:VC0395_0030 hypothetical protein. (491 aa)    
Predicted Functional Partners:
Swoo_2529
TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: vch:VCA0107 hypothetical protein.
 
 
 0.998
Swoo_2526
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: mmw:Mmwyl1_1199 protein of unknown function DUF879.
 
  
 0.992
Swoo_2521
KEGG: vco:VC0395_0022 hypothetical protein.
 
  
 0.990
Swoo_2527
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: vch:VCA0109 hypothetical protein.
 
  
 0.985
Swoo_2514
TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: aha:AHA_1826 hemolysin co-regulated protein.
 
 
 0.982
Swoo_2525
TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: vch:VCA0111 hypothetical protein.
 
  
 0.979
Swoo_2523
KEGG: plu:plu0366 hypothetical protein.
 
  
 0.975
Swoo_2522
TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: vch:VCA0114 hypothetical protein.
 
  
 0.971
Swoo_2516
TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: vch:VCA0120 IcmF-related protein.
 
  
 0.970
Swoo_2524
TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: vch:VCA0112 hypothetical protein.
 
  
 0.961
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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