Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2535PFAM: proteinase inhibitor I11 ecotin; KEGG: sse:Ssed_2074 proteinase inhibitor I11, ecotin. (190 aa)    
Predicted Functional Partners:
Swoo_2811
KEGG: sse:Ssed_1784 hypothetical protein; Belongs to the UPF0319 family.
   
    0.655
Swoo_2534
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sse:Ssed_2075 cation diffusion facilitator family transporter.
       0.493
Swoo_2533
PFAM: regulatory protein MarR; KEGG: sse:Ssed_2076 transcriptional regulator, MarR family.
       0.484
Swoo_4025
KEGG: sse:Ssed_3701 hypothetical protein.
  
     0.473
Swoo_1767
KEGG: sse:Ssed_2881 hypothetical protein.
  
     0.461
Swoo_3089
KEGG: sse:Ssed_1563 hypothetical protein; Belongs to the UPF0319 family.
  
    0.442
Swoo_3826
PFAM: protein of unknown function DUF541; KEGG: sse:Ssed_3918 protein of unknown function DUF541.
   
    0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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