Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2544PFAM: peptidase M2 peptidyl-dipeptidase A; KEGG: sse:Ssed_2057 peptidyl-dipeptidase A. (612 aa)    
Predicted Functional Partners:
Swoo_1286
PFAM: peptidase M20; peptidase M28; KEGG: sse:Ssed_1189 peptidase M28.
 
     0.674
Swoo_2263
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_0679 conserved hypothetical TonB-dependent receptor.
  
     0.542
Swoo_2436
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: aba:Acid345_2642 Kelch repeat protein.
 
     0.509
Swoo_2543
PFAM: regulatory protein TetR; KEGG: sse:Ssed_2066 putative transcriptional regulator, TetR family.
       0.501
Swoo_2707
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase domain protein; KEGG: sse:Ssed_1879 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.492
Swoo_1426
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_3760 TonB-dependent receptor.
  
     0.490
Swoo_1382
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.485
Swoo_2542
PFAM: acyl-CoA dehydrogenase domain protein; Protein of unknown function DUF1974; KEGG: sse:Ssed_2067 acyl-CoA dehydrogenase domain protein.
  
    0.482
Swoo_4274
KEGG: cps:CPS_0687 hypothetical protein.
  
     0.474
Swoo_3769
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: sse:Ssed_0814 peptidase S9B, dipeptidylpeptidase IV domain protein.
 
     0.472
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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