Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2568KEGG: sdn:Sden_2871 hypothetical protein. (263 aa)    
Predicted Functional Partners:
Swoo_2567
KEGG: sdn:Sden_2872 hypothetical protein.
 
 
 0.995
Swoo_0491
TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; Cadherin; Na-Ca exchanger/integrin-beta4; KEGG: sbn:Sbal195_4098 outer membrane adhesin like proteiin.
  
  
 0.538
Swoo_2569
KEGG: sdn:Sden_2870 hypothetical protein.
       0.516
Swoo_1168
KEGG: sse:Ssed_1086 general secretion pathway protein B.
   
  
 0.473
Swoo_2503
KEGG: hch:HCH_06118 hypothetical protein.
   
  
 0.473
Swoo_2566
KEGG: sdn:Sden_2873 hypothetical protein.
       0.457
Swoo_0379
KEGG: sse:Ssed_4221 hypothetical protein.
   
  
 0.443
Swoo_4776
KEGG: sse:Ssed_4385 hypothetical protein.
   
    0.400
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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