STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2580KEGG: sse:Ssed_2025 gonadoliberin III-related protein. (504 aa)    
Predicted Functional Partners:
Swoo_2581
TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: sse:Ssed_2024 alpha-L-glutamate ligase-like protein.
 
  
 0.958
Swoo_2579
PFAM: protein of unknown function DUF785; KEGG: sse:Ssed_2026 protein of unknown function DUF785.
 
     0.948
Swoo_2582
KEGG: sse:Ssed_2023 response regulator receiver protein.
       0.778
Swoo_2583
KEGG: sse:Ssed_2022 hypothetical protein.
       0.773
Swoo_2064
PFAM: protein of unknown function DUF785; KEGG: sse:Ssed_2601 protein of unknown function DUF785.
 
    0.753
Swoo_2584
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_2021 transcriptional regulator, LysR family.
 
     0.635
Swoo_0258
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0259 methyltransferase type 12.
 
     0.599
cmoB
Methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
       0.576
Swoo_0056
KEGG: sse:Ssed_0093 hypothetical protein.
 
     0.552
Swoo_0352
PFAM: LppC family lipoprotein; KEGG: sse:Ssed_4251 LppC family lipoprotein.
  
    0.514
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.