Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2584Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_2021 transcriptional regulator, LysR family. (299 aa)    
Predicted Functional Partners:
Swoo_1393
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sus:Acid_2184 transcriptional regulator, LysR family.
  
   
 0.657
Swoo_4058
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_3712 transcriptional regulator.
  
     0.638
Swoo_2580
KEGG: sse:Ssed_2025 gonadoliberin III-related protein.
 
     0.634
Swoo_2581
TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: sse:Ssed_2024 alpha-L-glutamate ligase-like protein.
 
     0.629
Swoo_2579
PFAM: protein of unknown function DUF785; KEGG: sse:Ssed_2026 protein of unknown function DUF785.
 
     0.616
Swoo_2975
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_0677 transcriptional regulator, LysR family.
  
     0.610
Swoo_4515
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_0454 transcriptional regulator, LysR family.
  
     0.605
Swoo_2582
KEGG: sse:Ssed_2023 response regulator receiver protein.
       0.572
Swoo_2583
KEGG: sse:Ssed_2022 hypothetical protein.
       0.572
Swoo_3732
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_3556 transcriptional regulator, LysR family.
  
   
 0.524
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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