Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2596Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_2007 putative two-component system sensor kinase. (457 aa)    
Predicted Functional Partners:
Swoo_0281
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_0279 two component transcriptional regulator, winged helix family.
 
 
 0.819
Swoo_3920
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pat:Patl_3411 two component transcriptional regulator, winged helix family.
 
 
 0.817
Swoo_2294
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_2316 response regulator receiver protein.
 
 
 0.816
Swoo_4252
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_0712 two component transcriptional regulator, winged helix family.
 
 
 0.812
Swoo_3978
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbn:Sbal195_3690 two component transcriptional regulator, winged helix family.
 
 
 0.810
Swoo_3011
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vpa:VPA1076 putative two-component response regulator.
 
 
 0.808
Swoo_0289
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfr:Sfri_0485 two component transcriptional regulator, winged helix family protein.
 
 
 0.800
Swoo_3962
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdn:Sden_0234 response regulator receiver.
 
 
 0.800
Swoo_1514
PFAM: response regulator receiver; KEGG: sse:Ssed_1383 response regulator containing a CheY-like protein receiver domain and a GGDEF domain-like protein.
 
 
 0.798
Swoo_1030
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_0981 two component transcriptional regulator, winged helix family.
 
 
 0.797
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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