Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_2601KEGG: sse:Ssed_2002 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Swoo_2163
KEGG: sse:Ssed_2442 hypothetical protein.
 
    0.719
Swoo_2316
KEGG: sse:Ssed_2293 hypothetical protein.
  
     0.665
Swoo_2985
KEGG: sbm:Shew185_2760 hypothetical protein.
  
     0.632
Swoo_3973
TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: sse:Ssed_3678 YecA family protein; Belongs to the UPF0149 family.
  
    0.608
Swoo_3990
KEGG: spl:Spea_3317 conserved hypothetical protein.
  
     0.582
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.566
Swoo_3294
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_3173 GCN5-related N-acetyltransferase.
  
     0.535
Swoo_4730
TIGRFAM: general secretion pathway protein H; KEGG: sse:Ssed_4354 general secretion pathway protein H.
  
     0.535
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.525
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.505
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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