Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2606KEGG: sse:Ssed_1994 hypothetical protein. (438 aa)    
Predicted Functional Partners:
dnaQ
DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
       0.830
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
  
     0.770
Swoo_3541
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_3371 type IV pilus assembly PilZ.
  
     0.769
Swoo_1804
KEGG: sse:Ssed_2840 hypothetical protein.
  
     0.768
Swoo_0788
KEGG: sse:Ssed_3796 hypothetical protein.
  
     0.761
Swoo_4218
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_0751 Sel1 domain protein repeat-containing protein.
 
     0.757
Swoo_2394
KEGG: sse:Ssed_2227 hypothetical protein.
  
     0.754
Swoo_1590
KEGG: sse:Ssed_3094 hypothetical protein.
  
     0.748
Swoo_4825
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.741
Swoo_1588
KEGG: sse:Ssed_3096 hypothetical protein.
  
     0.734
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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