STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2612PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: sse:Ssed_1988 lytic transglycosylase, catalytic. (517 aa)    
Predicted Functional Partners:
Swoo_0139
PFAM: Lytic transglycosylase catalytic; KEGG: slo:Shew_3650 lytic transglycosylase, catalytic.
  
  
 0.642
Swoo_2621
PFAM: Lytic transglycosylase catalytic; KEGG: sse:Ssed_1979 lytic transglycosylase, catalytic.
  
  
 0.610
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
       0.592
mltF
Lytic transglycosylase catalytic; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family.
 
   
 0.502
Swoo_1211
PFAM: peptidase M23B; Opacity-associated protein A domain protein; KEGG: sse:Ssed_1103 peptidase M23B.
 
  
 0.475
Swoo_1947
TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sse:Ssed_2675 lytic murein transglycosylase.
     
 0.473
Swoo_2738
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_1851 OmpA/MotB domain protein.
 
 
 
 0.433
Swoo_2610
KEGG: sse:Ssed_1990 hypothetical protein.
       0.409
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
 
  
 0.408
Swoo_3710
TIGRFAM: lytic murein transglycosylase B; KEGG: sse:Ssed_3487 lytic murein transglycosylase B.
      
 0.407
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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