Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2622PFAM: EAL domain protein; KEGG: sse:Ssed_1968 diguanylate phosphodiesterase. (242 aa)    
Predicted Functional Partners:
Swoo_2684
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: saz:Sama_0619 response regulator receiver protein.
 
 
 0.835
Swoo_3131
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_1520 GGDEF domain-like protein.
 
  
 0.828
Swoo_0469
Diguanylate cyclase/phosphodiesterase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: sse:Ssed_4146 diguanylate cyclase/phosphodiesterase with GAF sensor.
 
  
 0.827
Swoo_2828
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cbf:CLI_1295 putative sensory box-containing diguanylate cyclase.
 
 
 0.817
Swoo_2213
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: sse:Ssed_2389 hypothetical protein.
 
  
 0.816
Swoo_4119
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: saz:Sama_0583 diguanylate cyclase.
 
 
 0.811
Swoo_4422
Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_0539 diguanylate cyclase/phosphodiesterase.
  
  
 0.809
Swoo_0806
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_3776 diguanylate cyclase.
 
 
 0.806
Swoo_0292
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: sse:Ssed_0441 sensory box protein.
  
    0.805
Swoo_2555
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sse:Ssed_2045 diguanylate cyclase/phosphodiesterase.
  
    0.805
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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