Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2640PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_1938 nitrate/nitrite transporter. (424 aa)    
Predicted Functional Partners:
Swoo_2635
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_1953 nitrate/nitrite transporter.
 
  
  0.997
Swoo_2634
TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_1954 respiratory nitrate reductase alpha chain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.990
Swoo_2633
TIGRFAM: nitrate reductase, beta subunit; KEGG: sse:Ssed_1955 respiratory nitrate reductase beta subuni.
 
 
 0.989
Swoo_2631
KEGG: sse:Ssed_1957 nitrate reductase; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit.
 
 
 0.988
Swoo_1875
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sse:Ssed_2765 nitrite reductase (NAD(P)H), large subunit.
 
 
 0.937
Swoo_1876
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: sse:Ssed_2764 nitrite reductase (NAD(P)H), small subunit.
  
 
 0.924
Swoo_1877
TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_2763 nitrite transporter.
  
  
 
0.916
Swoo_2626
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_1964 nitrate/nitrite transporter.
  
  
 
0.916
napA
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
 
 0.908
napA-2
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
 
 0.908
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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