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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2645TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: sdn:Sden_1131 integron integrase; Belongs to the 'phage' integrase family. (319 aa)    
Predicted Functional Partners:
Swoo_2646
PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: she:Shewmr4_1444 transposase, IS204/IS1001/IS1096/IS1165 family protein.
 
   
 0.618
xerC
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
0.488
Swoo_3759
KEGG: sse:Ssed_3593 hypothetical protein.
  
    0.480
Swoo_1064
PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sfr:Sfri_0864 transposase IS116/IS110/IS902 family protein.
  
     0.462
Swoo_4722
PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sfr:Sfri_0864 transposase IS116/IS110/IS902 family protein.
  
     0.462
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.447
Swoo_1259
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; Prephenate dehydrogenase; KEGG: sse:Ssed_1164 chorismate mutase.
  
    0.429
Swoo_4577
KEGG: spl:Spea_3873 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
   
    0.416
Swoo_0157
KEGG: sse:Ssed_0177 competence protein ComF.
   
    0.414
torD
Cytoplasmic chaperone TorD family protein; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily.
   
    0.412
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.