Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2660KEGG: spl:Spea_3159 hydrolase (secreted protein). (317 aa)    
Predicted Functional Partners:
Swoo_2719
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; chitinase domain protein; SMART: chitinase II; KEGG: sbl:Sbal_2491 chitinase.
  
   
 0.723
Swoo_2011
KEGG: hau:Haur_0098 hypothetical protein.
  
     0.556
Swoo_3155
KEGG: spl:Spea_2732 hypothetical protein.
  
     0.528
Swoo_4491
KEGG: sdn:Sden_2175 hypothetical protein.
  
     0.513
Swoo_2718
PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: vvu:VV2_1258 hypothetical protein.
  
     0.507
Swoo_3261
KEGG: sse:Ssed_3142 hypothetical protein.
  
 
 0.503
Swoo_1101
Chitinase; PFAM: glycoside hydrolase family 19; Carbohydrate-binding family V/XII; KEGG: aha:AHA_0979 basic endochitinase.
  
   
 0.470
Swoo_3941
PFAM: Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: spe:Spro_0536 beta-N-acetylhexosaminidase.
  
     0.461
Swoo_0198
TIGRFAM: YD repeat protein; PFAM: Fibronectin type III domain protein; YD repeat-containing protein; FG-GAP repeat protein; KEGG: shm:Shewmr7_1180 YD repeat protein.
 
   
 0.439
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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