STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2695PFAM: 17 kDa surface antigen; KEGG: sse:Ssed_1890 17 kDa surface antigen. (160 aa)    
Predicted Functional Partners:
aat
Leucyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
       0.612
bpt
Arginyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
       0.612
Swoo_3375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_3242 TonB-dependent receptor.
  
   
 0.578
Swoo_4131
KEGG: sse:Ssed_3969 hypothetical protein.
  
   
 0.562
Swoo_3068
PFAM: protein of unknown function DUF1260; KEGG: sse:Ssed_1582 protein of unknown function DUF1260.
  
     0.547
Swoo_1281
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: slo:Shew_1090 OmpA/MotB domain protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
  
 0.538
Swoo_4513
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: spl:Spea_0456 OmpA domain protein transmembrane region-containing protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
  
 0.538
Swoo_0379
KEGG: sse:Ssed_4221 hypothetical protein.
  
 
 
 0.526
Swoo_4453
KEGG: sse:Ssed_0496 tetratricopeptide TPR_2 repeat protein.
  
     0.526
Swoo_4894
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_4483 TonB-dependent siderophore receptor.
  
   
 0.518
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.