Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swoo_2738PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_1851 OmpA/MotB domain protein. (289 aa)    
Predicted Functional Partners:
Swoo_1618
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
 
 0.972
Swoo_1588
KEGG: sse:Ssed_3096 hypothetical protein.
  
 
 
 0.897
Swoo_4218
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_0751 Sel1 domain protein repeat-containing protein.
  
 
 0.888
Swoo_1591
PFAM: protein of unknown function DUF400; KEGG: sse:Ssed_3093 protein of unknown function DUF400.
  
 
 
 0.879
Swoo_3474
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_3325 OmpA/MotB domain protein.
  
 
 
 0.823
Swoo_1616
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: sse:Ssed_3068 two component, sigma54 specific, transcriptional regulator, fis family.
 
  
 0.764
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
  
    0.689
Swoo_2123
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_2493 OmpA/MotB domain protein.
  
     0.685
Swoo_4825
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
   0.663
Swoo_1644
KEGG: sse:Ssed_3040 hypothetical protein.
  
   
 0.656
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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