Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swoo_2747PFAM: peptidase M28; KEGG: sse:Ssed_1839 peptidase M28. (556 aa)    
Predicted Functional Partners:
Swoo_3082
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2427 TonB-dependent receptor, plug.
  
     0.679
Swoo_2263
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_0679 conserved hypothetical TonB-dependent receptor.
  
     0.673
Swoo_3769
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: sse:Ssed_0814 peptidase S9B, dipeptidylpeptidase IV domain protein.
  
    0.655
Swoo_1426
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_3760 TonB-dependent receptor.
  
     0.642
Swoo_3083
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1252 TonB-dependent receptor.
  
     0.632
Swoo_1784
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2861 TonB-dependent receptor.
  
     0.631
Swoo_2565
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2036 TonB-dependent receptor.
  
     0.603
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
      
 0.580
Swoo_3206
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sse:Ssed_1470 short-chain dehydrogenase/reductase SDR.
      
 0.577
Swoo_3557
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_3385 diguanylate cyclase/phosphodiesterase.
      
 0.574
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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