STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2753KEGG: sse:Ssed_1835 hypothetical protein. (234 aa)    
Predicted Functional Partners:
Swoo_2273
PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: sse:Ssed_2334 alpha/beta hydrolase fold.
      0.573
Swoo_1653
PFAM: lipopolysaccharide biosynthesis protein; KEGG: slo:Shew_1400 lipopolysaccharide biosynthesis protein.
  
     0.539
Swoo_2754
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_1834 GCN5-related N-acetyltransferase.
       0.519
Swoo_2752
PFAM: transposase IS200-family protein; KEGG: she:Shewmr4_2466 transposase IS200-family protein.
       0.473
Swoo_1651
PFAM: polysaccharide export protein; KEGG: spl:Spea_1395 polysaccharide export protein.
  
     0.466
priB
Single-strand binding protein/Primosomal replication protein n; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.437
Swoo_2726
PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sse:Ssed_1862 type III restriction enzyme, res subunit.
  
     0.428
Swoo_2062
KEGG: sse:Ssed_2604 hypothetical protein.
  
     0.425
Swoo_0992
KEGG: sse:Ssed_0942 hypothetical protein.
  
     0.424
Swoo_3786
KEGG: sse:Ssed_3887 hypothetical protein.
  
     0.416
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.