Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2762PFAM: protein of unknown function DUF1538; KEGG: sse:Ssed_1826 protein of unknown function DUF1538. (244 aa)    
Predicted Functional Partners:
Swoo_2760
KEGG: sse:Ssed_1828 putative nitrogen regulatory protein P-II.
 
     0.918
Swoo_2759
PFAM: CBS domain containing protein; KEGG: sse:Ssed_1829 putative signal transduction protein with CBS domains.
 
     0.913
Swoo_2761
PFAM: protein of unknown function DUF1538; KEGG: sse:Ssed_1827 protein of unknown function DUF1538.
 
   
0.860
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.463
Swoo_1259
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; Prephenate dehydrogenase; KEGG: sse:Ssed_1164 chorismate mutase.
  
    0.446
Swoo_4577
KEGG: spl:Spea_3873 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
   
    0.434
Swoo_0157
KEGG: sse:Ssed_0177 competence protein ComF.
   
    0.409
Swoo_3759
KEGG: sse:Ssed_3593 hypothetical protein.
   
    0.409
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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