STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2767KEGG: slo:Shew_1490 ErfK/YbiS/YcfS/YnhG family protein. (179 aa)    
Predicted Functional Partners:
Swoo_1980
TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV; KEGG: sse:Ssed_2650 aminotransferase, class IV.
  
  
 0.645
Swoo_0663
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_3872 Sel1 domain protein repeat-containing protein.
      
 0.639
Swoo_4321
KEGG: sse:Ssed_0628 hypothetical protein.
      
 0.639
Swoo_0121
TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_0142 glutathione-disulfide reductase.
      
 0.631
Swoo_1163
PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sse:Ssed_1082 ErfK/YbiS/YcfS/YnhG family protein.
 
  
 0.594
Swoo_2768
PFAM: protein of unknown function DUF991; KEGG: sse:Ssed_1819 protein of unknown function DUF991.
       0.579
Swoo_2766
PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: sse:Ssed_1821 ion transport protein.
       0.523
Swoo_0560
Peptidase U6 penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.463
Swoo_2401
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: pde:Pden_0590 membrane protein involved in aromatic hydrocarbon degradation.
  
     0.456
Swoo_2765
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: sse:Ssed_1822 MATE efflux family protein.
       0.454
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.