Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2768PFAM: protein of unknown function DUF991; KEGG: sse:Ssed_1819 protein of unknown function DUF991. (190 aa)    
Predicted Functional Partners:
lapA
Protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.764
Swoo_3014
PFAM: YfcL protein; KEGG: spl:Spea_2585 YfcL protein.
  
     0.755
Swoo_1267
TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: sse:Ssed_1172 Trp operon repressor.
  
     0.744
Swoo_2948
PFAM: protein of unknown function DUF1097; KEGG: sse:Ssed_1663 hypothetical protein.
  
     0.720
Swoo_4220
KEGG: spl:Spea_3593 conserved hypothetical protein.
  
     0.716
Swoo_3641
PFAM: Uncharacterized lipoprotein; KEGG: sse:Ssed_3439 uncharacterized lipoprotein.
  
     0.698
Swoo_1808
PFAM: protein of unknown function UPF0227; KEGG: sse:Ssed_2836 protein of unknown function UPF0227; Belongs to the UPF0227 family.
  
     0.695
Swoo_0969
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_0928 uncharacterized conserved protein UCP006287; Belongs to the UPF0231 family.
  
     0.676
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
  
     0.669
Swoo_1321
PFAM: protein of unknown function DUF469; KEGG: slo:Shew_1125 protein of unknown function DUF469.
  
     0.660
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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