STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2769KEGG: slo:Shew_1487 hypothetical protein. (178 aa)    
Predicted Functional Partners:
Swoo_2773
PFAM: protein of unknown function DUF1365; KEGG: slo:Shew_1483 protein of unknown function DUF1365.
 
  
 0.950
Swoo_2770
KEGG: slo:Shew_1486 hypothetical protein.
 
   
 0.942
Swoo_2775
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: slo:Shew_1481 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.936
Swoo_2772
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_1484 cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.925
Swoo_2774
KEGG: slo:Shew_1482 amine oxidase.
 
   
 0.923
Swoo_2776
KEGG: slo:Shew_1480 protein of unknown function DUF1486.
 
     0.919
Swoo_2771
KEGG: slo:Shew_1485 hypothetical protein.
 
     0.881
Swoo_2779
TIGRFAM: anti-sigma factor, ChrR family; KEGG: slo:Shew_1477 anti-ECFsigma factor, ChrR.
 
   
 0.814
Swoo_2780
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: slo:Shew_1476 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
     0.722
Swoo_2777
Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: slo:Shew_1479 deoxyribodipyrimidine photo-lyase.
 
  
 0.716
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.