Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_2776KEGG: slo:Shew_1480 protein of unknown function DUF1486. (143 aa)    
Predicted Functional Partners:
Swoo_2775
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: slo:Shew_1481 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.962
Swoo_2773
PFAM: protein of unknown function DUF1365; KEGG: slo:Shew_1483 protein of unknown function DUF1365.
 
   
 0.958
Swoo_2774
KEGG: slo:Shew_1482 amine oxidase.
 
   
 0.955
Swoo_2769
KEGG: slo:Shew_1487 hypothetical protein.
 
     0.933
Swoo_2771
KEGG: slo:Shew_1485 hypothetical protein.
 
   
 0.916
Swoo_2770
KEGG: slo:Shew_1486 hypothetical protein.
 
     0.903
Swoo_2772
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_1484 cyclopropane-fatty-acyl-phospholipid synthase.
 
     0.882
Swoo_2778
PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: slo:Shew_1478 protein of unknown function DUF1722.
 
  
 0.815
Swoo_2779
TIGRFAM: anti-sigma factor, ChrR family; KEGG: slo:Shew_1477 anti-ECFsigma factor, ChrR.
 
     0.810
Swoo_2780
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: slo:Shew_1476 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
     0.801
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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