STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2795Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sse:Ssed_1801 transcriptional regulator, AraC family. (275 aa)    
Predicted Functional Partners:
Swoo_2358
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: smd:Smed_5741 helix-turn-helix-domain containing protein AraC type.
  
     0.636
Swoo_2712
PFAM: regulatory protein MarR; KEGG: sse:Ssed_1874 transcriptional regulator, MarR family.
  
    0.559
Swoo_0565
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbn:Sbal195_1435 transcriptional regulator, AraC family.
  
   0.522
Swoo_2796
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sse:Ssed_1800 threonine efflux protein, putative.
       0.482
Swoo_0135
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2491 response regulator receiver protein.
  
     0.468
Swoo_0361
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; KEGG: pat:Patl_1157 transcriptional regulator, AraC family.
  
     0.440
Swoo_3997
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sdn:Sden_0610 helix-turn-helix, AraC type.
  
   0.410
Swoo_1497
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: sse:Ssed_1364 hypothetical protein.
  
    0.400
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.