Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2801PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1794 binding-protein-dependent transport systems inner membrane component. (501 aa)    
Predicted Functional Partners:
Swoo_2802
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1793 putative phosphonate ABC transporter, ATP-binding protein.
 
 
 0.994
Swoo_2803
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: sse:Ssed_1792 phosphonate ABC transporter, periplasmic phosphonate-binding protein.
 
 
 0.992
Swoo_3167
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1502 phosphate ABC transporter, inner membrane subunit PstA.
   
  
 0.636
Swoo_1352
KEGG: ava:Ava_5014 ABC-type phosphate/phosphonate transport system periplasmic component-like.
 
  
 0.602
selU
tRNA 2-selenouridine synthase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.
 
     0.563
phnN
Phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
  
  
 0.484
Swoo_2804
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: spl:Spea_1746 two component transcriptional regulator, winged helix family.
     
 0.465
Swoo_2805
PFAM: ATP-binding region ATPase domain protein; KEGG: sse:Ssed_1790 integral membrane sensor signal transduction histidine kinase.
       0.465
Swoo_0790
KEGG: sse:Ssed_3793 hypothetical protein.
  
     0.406
Swoo_0791
KEGG: sse:Ssed_3792 putative lipoprotein.
  
     0.403
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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