STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2802PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1793 putative phosphonate ABC transporter, ATP-binding protein. (225 aa)    
Predicted Functional Partners:
Swoo_2803
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: sse:Ssed_1792 phosphonate ABC transporter, periplasmic phosphonate-binding protein.
 
 
 0.996
Swoo_2801
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1794 binding-protein-dependent transport systems inner membrane component.
 
 
 0.993
Swoo_1352
KEGG: ava:Ava_5014 ABC-type phosphate/phosphonate transport system periplasmic component-like.
  
 
 0.979
Swoo_1703
KEGG: sse:Ssed_2942 phosphonate ABC transporter, periplasmic phosphonate-binding protein.
  
 
 0.926
Swoo_0085
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0122 ABC transporter-related protein.
  
     0.729
phnN
Phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
  
  
 0.589
Swoo_4839
Transcriptional regulator, histidine utilization repressor, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sse:Ssed_4448 transcriptional regulator, histidine utilization repressor, GntR family.
  
  
 0.559
Swoo_4641
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: scl:sce5713 cell division cycle protein 48-related protein; Belongs to the AAA ATPase family.
  
     0.557
Swoo_3167
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_1502 phosphate ABC transporter, inner membrane subunit PstA.
   
  
 0.550
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.509
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.