STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2806PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: saz:Sama_1540 hypothetical protein. (230 aa)    
Predicted Functional Partners:
Swoo_3466
PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sse:Ssed_3318 isocitrate dehydrogenase (NAD(+)).
  
    0.746
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.694
Swoo_4346
KEGG: sse:Ssed_0607 hypothetical protein.
  
     0.692
Swoo_3375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_3242 TonB-dependent receptor.
 
  
 0.685
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
  
     0.678
Swoo_4866
PFAM: ABC-2 type transporter; KEGG: sse:Ssed_4462 ABC-2 type transporter.
  
     0.670
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.649
Swoo_1524
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sse:Ssed_1411 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase.
  
     0.648
Swoo_3370
KEGG: spl:Spea_0781 conserved hypothetical protein.
  
     0.630
Swoo_2709
KEGG: sse:Ssed_1878 hypothetical protein.
  
     0.629
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.