STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2811KEGG: sse:Ssed_1784 hypothetical protein; Belongs to the UPF0319 family. (226 aa)    
Predicted Functional Partners:
Swoo_2535
PFAM: proteinase inhibitor I11 ecotin; KEGG: sse:Ssed_2074 proteinase inhibitor I11, ecotin.
   
    0.711
Swoo_0969
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_0928 uncharacterized conserved protein UCP006287; Belongs to the UPF0231 family.
  
     0.657
Swoo_0925
KEGG: sse:Ssed_0827 hypothetical protein.
  
     0.599
Swoo_0048
PFAM: protein of unknown function DUF1488; KEGG: spl:Spea_0041 protein of unknown function DUF1488.
  
     0.523
Swoo_0244
PFAM: amino acid permease-associated region; KEGG: slo:Shew_3597 amino acid permease-associated region.
  
     0.505
Swoo_4133
PFAM: Endonuclease I; KEGG: sse:Ssed_3971 deoxyribonuclease I.
  
     0.477
Swoo_2810
KEGG: sse:Ssed_1785 hypothetical protein.
       0.464
Swoo_0551
KEGG: sse:Ssed_4086 hypothetical protein.
  
     0.456
Swoo_2812
PFAM: Patatin; KEGG: slo:Shew_2356 patatin.
       0.432
Swoo_2933
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: swi:Swit_0666 biotin/lipoyl attachment domain-containing protein.
  
     0.418
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.