Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2823PFAM: proline racemase; KEGG: sse:Ssed_1761 proline racemase; Belongs to the proline racemase family. (333 aa)    
Predicted Functional Partners:
Swoo_2820
PFAM: FAD dependent oxidoreductase; KEGG: spl:Spea_1706 FAD dependent oxidoreductase.
 
  
 0.983
Swoo_2822
Dihydrodipicolinate synthetase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
   
 0.905
Swoo_2824
PFAM: Aldehyde Dehydrogenase; KEGG: sse:Ssed_1760 aldehyde dehydrogenase.
 
 
 
 0.904
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.823
Swoo_3726
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: spl:Spea_3170 ornithine cyclodeaminase.
 
   
 0.678
Swoo_2825
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sse:Ssed_1759 transcriptional regulator, GntR family.
 
     0.623
Swoo_2821
Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C) in vitro. Displays no proline racemase activity.
 
    
0.482
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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