Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2824PFAM: Aldehyde Dehydrogenase; KEGG: sse:Ssed_1760 aldehyde dehydrogenase. (521 aa)    
Predicted Functional Partners:
Swoo_2822
Dihydrodipicolinate synthetase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.983
Swoo_0813
PFAM: Aldehyde Dehydrogenase; KEGG: vha:VIBHAR_05501 hypothetical protein.
  
  
 
0.905
Swoo_2823
PFAM: proline racemase; KEGG: sse:Ssed_1761 proline racemase; Belongs to the proline racemase family.
 
 
 
 0.904
Swoo_1837
2-oxoglutarate dehydrogenase, E1 subunit; KEGG: sse:Ssed_2814 oxoglutarate dehydrogenase (succinyl-transferring); TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase E1 component; Transketolase central region.
   
 0.846
Swoo_1137
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sse:Ssed_1068 2-ketoglutarate: NADP oxidoreductase, alpha subunit.
   
 0.835
Swoo_3466
PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sse:Ssed_3318 isocitrate dehydrogenase (NAD(+)).
   
 0.834
Swoo_1138
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: sse:Ssed_1069 putative ferredoxin oxidoreductase beta subunit.
     
 0.806
Swoo_2702
Isocitrate dehydrogenase, NADP-dependent; KEGG: sse:Ssed_1883 isocitrate dehydrogenase (NADP(+)); TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; Belongs to the monomeric-type IDH family.
     
  0.800
Swoo_2820
PFAM: FAD dependent oxidoreductase; KEGG: spl:Spea_1706 FAD dependent oxidoreductase.
 
  
 0.797
Swoo_2821
Proline racemase; Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C) in vitro. Displays no proline racemase activity.
 
 
 
 0.762
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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