Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2835PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: sse:Ssed_1751 cyclic nucleotide-binding protein. (615 aa)    
Predicted Functional Partners:
Swoo_2834
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: slo:Shew_2368 exonuclease, RNase T and DNA polymerase III.
    0.978
Swoo_2838
PFAM: Na+/solute symporter; KEGG: sse:Ssed_1746 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.967
Swoo_2839
KEGG: sse:Ssed_1745 hypothetical protein.
 
     0.848
Swoo_2836
PFAM: Amidohydrolase 3; KEGG: cps:CPS_2078 hypothetical protein.
       0.475
Swoo_1221
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sse:Ssed_1126 glutamate synthase (ferredoxin).
     
 0.403
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.401
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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