Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swoo_2836PFAM: Amidohydrolase 3; KEGG: cps:CPS_2078 hypothetical protein. (597 aa)    
Predicted Functional Partners:
Swoo_1517
PFAM: DoxX family protein; KEGG: vfi:VFA0336 hypothetical membrane spanning protein.
 
    0.653
Swoo_4156
PFAM: FxsA cytoplasmic membrane protein; KEGG: sse:Ssed_4013 FxsA cytoplasmic membrane protein.
  
  
 0.562
Swoo_2837
KEGG: spl:Spea_1641 hypothetical protein.
       0.561
Swoo_0039
PFAM: Peptidoglycan-binding LysM; KEGG: sse:Ssed_0036 peptidoglycan-binding LysM.
   
    0.505
Swoo_2834
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: slo:Shew_2368 exonuclease, RNase T and DNA polymerase III.
       0.481
Swoo_2835
PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: sse:Ssed_1751 cyclic nucleotide-binding protein.
       0.475
Swoo_3252
N-acyl-D-amino-acid deacylase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cps:CPS_2691 amidohydrolase family protein.
 
     0.415
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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