STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2853PFAM: beta-lactamase domain protein; KEGG: cps:CPS_1904 metallo-beta-lactamase family protein. (305 aa)    
Predicted Functional Partners:
Swoo_2852
KEGG: sil:SPO0750 hypothetical protein.
  
    0.666
Swoo_4077
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_3727 NADH dehydrogenase.
  
 0.581
Swoo_2229
KEGG: sse:Ssed_2356 membrane protein-like protein.
  
     0.494
Swoo_0566
PFAM: aminotransferase class V; beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: slo:Shew_3354 aminotransferase, class V.
 
 
 0.489
Swoo_2851
KEGG: cdf:CD2993 hypothetical protein.
       0.443
Swoo_2154
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: sse:Ssed_2450 protein of unknown function DUF882.
  
    0.421
Swoo_1481
Hypothetical protein; KEGG: btr:Btr_0394 filamentous hemagglutinin.
  
     0.417
Swoo_0427
PFAM: peptidase domain protein; KEGG: pha:PSHAa2649 serine protease precursor.
  
     0.406
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.