STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2874PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: sse:Ssed_1717 C4-dicarboxylate transporter/malic acid transport protein. (322 aa)    
Predicted Functional Partners:
gltS-2
Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
  
    0.585
gltS-3
Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
  
    0.585
gltS
Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
  
    0.572
Swoo_2873
PFAM: O-methyltransferase family 2; KEGG: sse:Ssed_1718 O-methyltransferase, putative.
       0.492
Swoo_0271
KEGG: spl:Spea_3943 conserved hypothetical protein.
  
     0.473
Swoo_0696
PFAM: putative esterase; KEGG: sde:Sde_2868 cysteine synthase A.
   
    0.440
Swoo_3542
PFAM: putative esterase; KEGG: slo:Shew_1666 putative esterase.
   
    0.440
Swoo_4495
PFAM: putative esterase; KEGG: spl:Spea_0471 putative esterase.
   
    0.440
Swoo_4845
KEGG: sse:Ssed_4452 hypothetical protein.
   
    0.440
Swoo_3263
Sodium/hydrogen exchanger; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: sse:Ssed_3143 potassium efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
   
 0.439
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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