STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2876PFAM: C4-dicarboxylate anaerobic carrier; KEGG: sse:Ssed_1715 C4-dicarboxylate anaerobic carrier. (513 aa)    
Predicted Functional Partners:
Swoo_2877
Sodium/pantothenate symporter; TIGRFAM: SSS sodium solute transporter superfamily; sodium/pantothenate symporter; PFAM: Na+/solute symporter; KEGG: sse:Ssed_1714 putative sodium/pantothenate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.529
Swoo_0134
PFAM: AbgT putative transporter; KEGG: sse:Ssed_0156 AbgT putative transporter.
  
     0.483
Swoo_1432
KEGG: sse:Ssed_3194 hypothetical protein.
  
     0.471
Swoo_2878
KEGG: sse:Ssed_1713 hypothetical protein.
       0.457
Swoo_3673
AbgT putative transporter; PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; short chain fatty acid transporter; KEGG: spl:Spea_3120 AbgT putative transporter.
  
     0.444
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.