STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2879Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_1675 transcriptional regulator, LysR family. (301 aa)    
Predicted Functional Partners:
Swoo_0278
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3936 transcriptional regulator, LysR family.
  
     0.740
Swoo_3256
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_2699 transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.714
Swoo_0425
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: she:Shewmr4_0006 transcriptional regulator, LysR family.
  
     0.706
Swoo_3668
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_2897 transcriptional regulator, LysR family.
  
     0.694
Swoo_4520
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_0451 transcriptional regulator, LysR family.
  
     0.683
Swoo_3418
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ctc:CTC00153 transcriptional regulatory protein.
  
     0.678
Swoo_2452
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VF1066 transcriptional regulators, LysR family.
  
     0.672
Swoo_2975
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_0677 transcriptional regulator, LysR family.
  
     0.669
Swoo_4804
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vha:VIBHAR_06296 transcriptional regulator.
  
     0.658
Swoo_2676
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbn:Sbal195_0999 transcriptional regulator, LysR family.
  
     0.646
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.