Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Swoo_2882KEGG: sse:Ssed_1709 hypothetical protein. (510 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
   
    0.969
Swoo_1023
KEGG: sse:Ssed_0974 hypothetical protein.
  
     0.650
Swoo_0775
PFAM: MltA-interacting MipA family protein; KEGG: sse:Ssed_3808 hypothetical protein.
  
     0.580
Swoo_3623
KEGG: sse:Ssed_3434 glycine cleavage system regulatory protein-like protein.
  
     0.525
Swoo_0290
KEGG: shm:Shewmr7_0668 hypothetical protein.
  
     0.522
Swoo_2879
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_1675 transcriptional regulator, LysR family.
  
     0.468
Swoo_1024
PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0975 secretion protein HlyD family protein.
  
     0.456
Swoo_1348
KEGG: sse:Ssed_1248 hypothetical protein.
  
     0.430
Swoo_0291
KEGG: slo:Shew_3417 hypothetical protein.
  
     0.428
Swoo_0582
KEGG: vha:VIBHAR_04990 hypothetical protein.
  
     0.428
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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