STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2891PFAM: protein of unknown function UPF0118; KEGG: sse:Ssed_1700 protein of unknown function UPF0118. (394 aa)    
Predicted Functional Partners:
Swoo_2890
KEGG: sse:Ssed_1701 hypothetical protein; Belongs to the methyltransferase superfamily.
       0.612
Swoo_2892
PFAM: dihydroneopterin aldolase; KEGG: spl:Spea_1664 dihydroneopterin aldolase.
       0.576
Swoo_0725
PFAM: protein of unknown function DUF350; KEGG: sse:Ssed_3835 protein of unknown function DUF350.
  
     0.444
Swoo_4407
KEGG: sse:Ssed_0553 MSHA pilin protein MshC.
  
     0.428
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.