Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_2896PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_1698 protein of unknown function DUF214. (821 aa)    
Predicted Functional Partners:
Swoo_2897
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1697 ABC transporter related.
 
 
 
 0.974
Swoo_2898
Arylesterase; PFAM: lipolytic protein G-D-S-L family; KEGG: sse:Ssed_1696 arylesterase.
 
 
   0.963
Swoo_3734
PFAM: lipolytic protein G-D-S-L family; KEGG: sse:Ssed_3558 lipolytic enzyme, G-D-S-L.
 
 
   0.880
Swoo_4108
KEGG: spl:Spea_0625 conserved hypothetical protein.
 
  
 0.716
Swoo_0488
PFAM: protein of unknown function DUF484; KEGG: sse:Ssed_4128 protein of unknown function DUF484.
  
   
 0.506
Swoo_0941
KEGG: sfr:Sfri_2048 L-sorbosone dehydrogenase, putative.
  
     0.464
Swoo_4189
KEGG: sse:Ssed_0780 L-sorbosone dehydrogenase, putative.
  
     0.455
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
  
 0.429
Swoo_4106
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3953 ABC transporter-related protein.
  
  
 0.429
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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