STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2898Arylesterase; PFAM: lipolytic protein G-D-S-L family; KEGG: sse:Ssed_1696 arylesterase. (190 aa)    
Predicted Functional Partners:
Swoo_3734
PFAM: lipolytic protein G-D-S-L family; KEGG: sse:Ssed_3558 lipolytic enzyme, G-D-S-L.
  
  
 
0.925
Swoo_2896
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_1698 protein of unknown function DUF214.
 
     0.902
Swoo_2897
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1697 ABC transporter related.
 
     0.770
ubiG
Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
     
 0.463
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
     
 0.444
Swoo_2899
KEGG: sse:Ssed_1695 hypothetical protein.
       0.435
Swoo_4082
Cobalbumin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.
     
 0.415
folD
Methylenetetrahydrofolate dehydrogenase (NADP(+)); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
     
 0.409
Swoo_0941
KEGG: sfr:Sfri_2048 L-sorbosone dehydrogenase, putative.
  
     0.407
Swoo_3210
acyl-CoA thioesterase II; KEGG: sse:Ssed_1466 palmitoyl-CoA hydrolase; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase.
      
 0.407
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.