STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2899KEGG: sse:Ssed_1695 hypothetical protein. (333 aa)    
Predicted Functional Partners:
Swoo_0291
KEGG: slo:Shew_3417 hypothetical protein.
  
     0.622
Swoo_1859
PFAM: Forkhead-associated protein; KEGG: cps:CPS_0998 FHA domain protein.
  
     0.610
Swoo_0290
KEGG: shm:Shewmr7_0668 hypothetical protein.
  
     0.577
Swoo_1517
PFAM: DoxX family protein; KEGG: vfi:VFA0336 hypothetical membrane spanning protein.
  
     0.547
Swoo_2391
KEGG: sse:Ssed_2233 hypothetical protein.
  
     0.541
Swoo_1515
KEGG: sse:Ssed_1384 hypothetical protein.
  
     0.513
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.510
Swoo_4101
KEGG: sbn:Sbal195_4665 hypothetical protein.
  
     0.498
Swoo_0582
KEGG: vha:VIBHAR_04990 hypothetical protein.
  
     0.471
Swoo_1023
KEGG: sse:Ssed_0974 hypothetical protein.
  
     0.453
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.