STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2901KEGG: spl:Spea_1657 conserved hypothetical protein. (393 aa)    
Predicted Functional Partners:
Swoo_4166
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.809
Swoo_4165
Cytochrome b/b6 domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.799
Swoo_2425
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: sse:Ssed_2211 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.750
Swoo_2424
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: sse:Ssed_2212 cytochrome c oxidase, cbb3-type, subunit II.
  
 
 0.737
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
 
 
 0.658
Swoo_0175
PFAM: cytochrome c oxidase subunit III; KEGG: sse:Ssed_0195 cytochrome c oxidase, subunit III.
  
 
 0.642
Swoo_0431
TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: sfr:Sfri_0222 cytochrome c oxidase, subunit III.
  
 
 0.642
Swoo_4254
KEGG: sse:Ssed_3588 decaheme cytochrome c.
 
 
 0.642
Swoo_2900
KEGG: slo:Shew_2404 hypothetical protein.
 
    
0.601
Swoo_0761
KEGG: shm:Shewmr7_0883 putative nitric oxide reductase (subunit B) transmembrane protein.
  
 
 0.594
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.