STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2902Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: spl:Spea_1656 transcriptional regulator, AraC family. (341 aa)    
Predicted Functional Partners:
Swoo_4268
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sse:Ssed_0701 helix-turn-helix-domain containing protein, AraC type.
  
     0.768
Swoo_2321
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cps:CPS_3431 transcriptional regulator, AraC family.
  
     0.767
Swoo_0183
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sse:Ssed_0203 conserved hypothetical AraC-type transcriptional regulator.
  
     0.764
Swoo_2900
KEGG: slo:Shew_2404 hypothetical protein.
  
     0.583
Swoo_4829
KEGG: sse:Ssed_4436 hypothetical protein.
  
     0.486
Swoo_2903
PFAM: peptidase S49; Peptidase S49 domain protein; KEGG: sse:Ssed_1694 peptidase S49, N-terminal domain protein.
       0.484
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.477
Swoo_2901
KEGG: spl:Spea_1657 conserved hypothetical protein.
  
     0.469
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
     0.465
Swoo_3997
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sdn:Sden_0610 helix-turn-helix, AraC type.
  
   0.420
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.