Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2903PFAM: peptidase S49; Peptidase S49 domain protein; KEGG: sse:Ssed_1694 peptidase S49, N-terminal domain protein. (343 aa)    
Predicted Functional Partners:
Swoo_4930
Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
  
 0.602
Swoo_3564
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
      
 0.576
Swoo_2904
KEGG: sse:Ssed_1693 hypothetical protein.
       0.541
rlmD
RNA methyltransferase, TrmA family; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
  
    0.514
Swoo_1234
PFAM: protein of unknown function DUF339; KEGG: sse:Ssed_1139 protein of unknown function DUF339.
  
     0.499
Swoo_2902
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: spl:Spea_1656 transcriptional regulator, AraC family.
       0.484
Swoo_4033
PFAM: membrane-flanked domain; KEGG: sse:Ssed_3703 membrane-flanked domain protein.
  
    0.447
Swoo_2905
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sse:Ssed_1692 short-chain dehydrogenase/reductase SDR.
 
     0.443
Swoo_4032
PFAM: membrane-flanked domain; KEGG: sse:Ssed_3702 membrane-flanked domain protein.
  
    0.436
trmA
tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA).
 
    0.436
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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