Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2909Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. (262 aa)    
Predicted Functional Partners:
Swoo_2908
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
 
 0.999
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.940
Swoo_2907
Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sse:Ssed_1691 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.
  
  
 0.865
Swoo_3784
KEGG: sse:Ssed_3885 hypothetical protein.
 
 
 0.780
cmk
KEGG: sse:Ssed_2299 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region.
 
  
 0.679
Swoo_0411
Hypothetical protein; KEGG: ilo:IL0645 predicted membrane protein.
  
 
 0.641
Swoo_2910
TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: sse:Ssed_1688 SUA5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family.
       0.641
Swoo_3079
KEGG: slo:Shew_2478 hypothetical protein.
  
 
 0.641
Swoo_2911
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sse:Ssed_1687 PHP C-terminal domain protein.
       0.570
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
  
 0.563
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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