STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2922TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (458 aa)    
Predicted Functional Partners:
Swoo_3078
PFAM: MotA/TolQ/ExbB proton channel; KEGG: slo:Shew_2477 MotA/TolQ/ExbB proton channel.
 
 
 0.816
Swoo_3077
PFAM: MotA/TolQ/ExbB proton channel; KEGG: slo:Shew_2476 MotA/TolQ/ExbB proton channel.
 
 
 0.778
Swoo_3076
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: slo:Shew_2475 biopolymer transport protein ExbD/TolR.
 
 
 0.756
Swoo_3079
KEGG: slo:Shew_2478 hypothetical protein.
 
   
 0.696
Swoo_2921
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_1021 TonB-dependent receptor.
 
 
 
 0.681
Swoo_4485
Transcriptional regulator, CadC; PFAM: TPR repeat-containing protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sdn:Sden_3304 transcriptional regulatory protein-like protein.
 
 
 
 0.657
tolR
Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.648
Swoo_4007
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: spl:Spea_3330 biopolymer transport protein ExbD/TolR.
  
 
 0.648
Swoo_1886
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2752 TonB-dependent receptor.
 
 
 0.636
Swoo_0230
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3904 TonB-dependent receptor.
 
 
 0.578
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.