Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_2929KEGG: cps:CPS_3054 tat (twin-arginine translocation) pathway signal sequence domain protein. (175 aa)    
Predicted Functional Partners:
Swoo_2930
PFAM: glucose-methanol-choline oxidoreductase; KEGG: cps:CPS_3053 putative oxidoreductase.
 
     0.932
Swoo_2933
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: swi:Swit_0666 biotin/lipoyl attachment domain-containing protein.
 
     0.740
Swoo_3367
KEGG: vvy:VV2399 hypothetical protein.
 
     0.733
Swoo_2999
Gluconate 2-dehydrogenase (acceptor); PFAM: glucose-methanol-choline oxidoreductase; KEGG: sse:Ssed_3542 glucose-methanol-choline oxidoreductase.
 
     0.731
Swoo_3868
KEGG: vfi:VF1213 hypothetical protein.
 
     0.718
Swoo_2935
KEGG: cps:CPS_3049 hypothetical protein.
 
     0.620
Swoo_2931
Pyruvate dehydrogenase (acetyl-transferring); PFAM: dehydrogenase E1 component; KEGG: cps:CPS_3052 TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit.
 
     0.579
Swoo_2932
PFAM: Transketolase central region; Transketolase domain protein; KEGG: cps:CPS_3051 TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit.
 
     0.518
Swoo_2258
KEGG: cps:CPS_1891 hypothetical protein.
  
     0.470
Swoo_2928
KEGG: sbm:Shew185_3462 hypothetical protein.
       0.459
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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