Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2937KEGG: cps:CPS_3046 hypothetical protein. (399 aa)    
Predicted Functional Partners:
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.722
Swoo_4255
KEGG: sse:Ssed_0707 putative FG-GAP repeat lipoprotein.
  
     0.678
Swoo_2256
KEGG: cps:CPS_1889 hypothetical protein; Belongs to the bacterial solute-binding protein 3 family.
  
     0.675
Swoo_2993
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_0485 TonB-dependent receptor.
  
     0.664
Swoo_2257
KEGG: pat:Patl_1857 cytochrome c550.
  
    0.655
Swoo_3857
KEGG: sfr:Sfri_3645 putative lipoprotein.
  
     0.630
Swoo_3375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_3242 TonB-dependent receptor.
  
    0.616
Swoo_2939
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_3057 glyoxalase family protein.
 
     0.614
Swoo_2255
TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: cps:CPS_1887 quinoprotein alcohol dehydrogenase.
 
    0.554
Swoo_2076
PFAM: major facilitator superfamily MFS_1; KEGG: sbn:Sbal195_2468 major facilitator superfamily MFS_1.
  
     0.528
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.