Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_2938KEGG: cps:CPS_3056 hypothetical protein. (414 aa)    
Predicted Functional Partners:
Swoo_2670
KEGG: sse:Ssed_1928 hypothetical protein.
  
     0.728
Swoo_2939
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_3057 glyoxalase family protein.
 
     0.609
Swoo_2937
KEGG: cps:CPS_3046 hypothetical protein.
 
     0.509
Swoo_2321
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cps:CPS_3431 transcriptional regulator, AraC family.
  
     0.461
Swoo_2999
Gluconate 2-dehydrogenase (acceptor); PFAM: glucose-methanol-choline oxidoreductase; KEGG: sse:Ssed_3542 glucose-methanol-choline oxidoreductase.
  
     0.449
Swoo_4117
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: spl:Spea_0616 transcriptional regulator, AraC family.
  
     0.438
Swoo_0423
KEGG: saz:Sama_1180 hypothetical protein.
  
     0.403
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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